The problem with automatic setting of the vehicle protection system (Endless Space 2)

Example: is in the system the warship protects. Sent to her colonial and on arrival, instead of reported I'm in, maybe that thread we colonize? he some hell automatically falls into the protection system, as already in her military - zaparivat to control it - how to treat?
the first option is to send in to the colonial, and then the military does not offer